1VPF	Growth Factor	date	Apr 08, 1997
title	Structure Of Human Vascular Endothelial Growth Factor
authors	Y.A.Muller, A.M.De Vos
compound		source
Molecule: Vascular Endothelial Growth Factor Chain: A, B, C, D Fragment: Receptor Binding Domain, Residues 8 - 109 Synonym: Vegf, Vascular Permeability Factor, Vpf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.190 59.810 77.520 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1CZ8, 1MKG
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Vascular endothelial growth factor: crystal structure and functional mapping of the kinase domain receptor binding site., Muller YA, Li B, Christinger HW, Wells JA, Cunningham BC, de Vos AM, Proc Natl Acad Sci U S A 1997 Jul 8;94(14):7192-7. PMID:9207067

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1vpf.pdb1.gz) 34 Kb Biological Unit Coordinates (1vpf.pdb2.gz) 34 Kb CSU: Contacts of Structural Units for 1VPF Likely Quarternary Molecular Structure file(s) for 1VPF Structure Factors (303 Kb) Retrieve 1VPF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VPF from S2C, [Save to disk] Re-refined 1vpf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VPF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VPF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VPF, from MSDmotif at EBI Genome occurence of 1VPF's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vpfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vpfb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1vpfc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1vpfd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vpf] [1vpf_D] [1vpf_A] [1vpf_C] [1vpf_B] SWISS-PROT database: [P15692] Domain organization of [VEGFA_HUMAN] by SWISSPFAM Domain found in 1VPF: [PDGF ] by SMART

Other resources with information on 1VPF

Community annotation for 1VPF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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