1VR1	Specifity for Plasminogen Activator Inhibitor-1	date
authors	Dekker, R.J., Eichinger, A., Stoop, A.A., Bode, W., Pannekoek, H., Horrevoets, A.J.G.
compound		source
symmetry		R_factor R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.90
ligand	TYS	enzyme
related structures	by homologous chain: 1C1W, 1G32
Gene Ontology	Chain Function Process Component H L
Primary reference	The variable region-1 from tissue-type plasminogen activator confers specificity for plasminogen activator inhibitor-1 to thrombin by facilitating catalysis: release of a kinetic block by a heterologous protein surface loop., Dekker RJ, Eichinger A, Stoop AA, Bode W, Pannekoek H, Horrevoets AJ, J Mol Biol 1999 Oct 29;293(3):613-27. PMID:10543954

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1vr1.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1VR1 CSU: Contacts of Structural Units for 1VR1 Likely Quarternary Molecular Structure file(s) for 1VR1 Retrieve 1VR1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VR1 from S2C, [Save to disk]

View 1VR1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VR1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VR1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vr1.1, region L:,H [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vr1] [1vr1_I] [1vr1_L] [1vr1_H] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1VR1: [Tryp_SPc ] by SMART

Other resources with information on 1VR1

Community annotation for 1VR1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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