1VSC	Cell Adhesion Protein	date	Apr 27, 1995
title	Vcam-1
authors	J.Wang, T.Stehle, L.Osborn
compound		source
Molecule: Vascular Cell Adhesion Molecule-1 Chain: A, B Fragment: N-Terminal Two-Domain Fragment Synonym: Vcam-1 Engineered: Yes Mutation: Yes Other_details: Hybrid Molecule Composed Of Vcam-1 Domains And 2 Fused To Igg, Hinge And Fc		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcam-D1d2-Ig Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_plasmid: Sab146 Expression_system_gene: Vcam-D1d2-Ig
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.090 48.860 73.440 90.00 117.42 90.00
method	X-Ray Diffraction	resolution	1.90 Å
related structures	by homologous chain: 1IJ9, 1VCA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The crystal structure of an N-terminal two-domain fragment of vascular cell adhesion molecule 1 (VCAM-1): a cyclic peptide based on the domain 1 C-D loop can inhibit VCAM-1-alpha 4 integrin interaction., Wang JH, Pepinsky RB, Stehle T, Liu JH, Karpusas M, Browning B, Osborn L, Proc Natl Acad Sci U S A 1995 Jun 6;92(12):5714-8. PMID:7539925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (1vsc.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 1VSC Likely Quarternary Molecular Structure file(s) for 1VSC Structure Factors (251 Kb) Retrieve 1VSC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VSC from S2C, [Save to disk] Re-refined 1vsc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VSC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VSC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VSC, from MSDmotif at EBI Genome occurence of 1VSC's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vsca2, region A:1-90 [Jmol] [rasmolscript] [script source]     - Domain d1vsca1, region A:91-196 [Jmol] [rasmolscript] [script source]     - Domain d1vscb2, region B:1-90 [Jmol] [rasmolscript] [script source]     - Domain d1vscb1, region B:91-196 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vsc_A] [1vsc] [1vsc_B] SWISS-PROT database: [P19320] Domain organization of [VCAM1_HUMAN] by SWISSPFAM Domain found in 1VSC: [IG ] by SMART

Other resources with information on 1VSC

Community annotation for 1VSC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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