1VSR	Hydrolase	date	Feb 13, 1999
title	Very Short Patch Repair (Vsr) Endonuclease From Escherichia
authors	S.E.Tsutakawa, T.Muto, H.Jingami, N.Kunishima, M.Ariyoshi, D.Kohd M.Nakagawa, K.Morikawa
compound		source
Molecule: Protein (Vsr Endonuclease) Chain: A Fragment: Fragment Synonym: Patch Repair Protein,Dna Mismatch Endonuclease Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K12 Gene: Vsr Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Plmvsr1 Expression_system_gene: Vsr Other_details: Pcr
symmetry	Space Group: P 21 21 21	R_factor 0.196 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.020 54.240 73.520 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZN	enzyme	Hydrolase E.C.3.1 BRENDA
related structures	by homologous chain: 1CW0
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallographic and functional studies of very short patch repair endonuclease., Tsutakawa SE, Muto T, Kawate T, Jingami H, Kunishima N, Ariyoshi M, Kohda D, Nakagawa M, Morikawa K, Mol Cell 1999 May;3(5):621-8. PMID:10360178

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1vsr.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 1VSR CSU: Contacts of Structural Units for 1VSR Likely Quarternary Molecular Structure file(s) for 1VSR Structure Factors (90 Kb) Retrieve 1VSR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VSR from S2C, [Save to disk] Re-refined 1vsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VSR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VSR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VSR, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vsra_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vsr] [1vsr_A] SWISS-PROT database: [P09184] Domain organization of [VSR_ECOLI] by SWISSPFAM

Other resources with information on 1VSR

Community annotation for 1VSR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---