1VXG Oxygen Storage date Jan 09, 1996
title Native Sperm Whale Myoglobin
authors F.Yang, G.N.Phillips Jr.
compound source
Molecule: Myoglobin
Chain: A
Other_details: Ph 6.0, 4 Degrees Celsius
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Organ: Skeletal
Tissue: Skeletal Muscle
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.566 30.916 34.815 90.00 106.02 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand HEM, SO4 enzyme
related structures by homologous chain: 1LTW, 2SPO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of CO-, deoxy- and met-myoglobins at various pH values., Yang F, Phillips GN Jr, J Mol Biol 1996 Mar 8;256(4):762-74. PMID:8642596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1vxg.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1VXG
  • CSU: Contacts of Structural Units for 1VXG
  • Likely Quarternary Molecular Structure file(s) for 1VXG
  • Structure Factors (97 Kb)
  • Retrieve 1VXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VXG from S2C, [Save to disk]
  • Re-refined 1vxg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VXG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VXG, from MSDmotif at EBI
  • Genome occurence of 1VXG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vxg__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vxg] [1vxg_A]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
    • Other resources with information on 1VXG
  • Community annotation for 1VXG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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