1W06 Oxidoreductase date Jun 01, 2004
title Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe N
authors A.J.Long, I.J.Clifton, P.J.Rutledge
compound source
Molecule: Isopenicillin N Synthetase
Chain: A
Synonym: Ipns, Isopenicillin N Synthase
Ec: 1.21.3.1
Engineered: Yes
Organism_scientific: Emericella Nidulans
Organism_taxid: 162425
Gene: Pcb C
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
Expression_system_plasmid: Pjb703; Other_details:
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.130 71.450 101.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand FE2, HOA, SO4, W05 enzyme Oxidoreductase E.C.1.21.3.1 BRENDA
related structures by homologous chain: 1ODN, 1W03
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies on the reaction of isopenicillin N synthase with the truncated substrate analogues delta-(L-alpha-aminoadipoyl)-L-cysteinyl-glycine and delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-alanine., Long AJ, Clifton IJ, Roach PL, Baldwin JE, Rutledge PJ, Schofield CJ, Biochemistry. 2005 May 3;44(17):6619-28. PMID:15850395
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1w06.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1W06
  • CSU: Contacts of Structural Units for 1W06
  • Likely Quarternary Molecular Structure file(s) for 1W06
  • Structure Factors (284 Kb)
  • Retrieve 1W06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W06 from S2C, [Save to disk]
  • Re-refined 1w06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W06, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w06_A] [1w06]
  • SWISS-PROT database: [P05326]
  • Domain organization of [IPNS_EMENI] by SWISSPFAM
  • Other resources with information on 1W06
  • Community annotation for 1W06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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