1W5T Dna Replication Initiation date Aug 09, 2004
title Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp Complexes)
authors M.R.Singleton, R.Morales, I.Grainge, N.Cook, M.N.Isupov, D.B.Wigley
compound source
Molecule: Orc2
Chain: A, B, C
Synonym: Hypothetical Protein Ape0152
Engineered: Yes
 Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: K1
symmetry Space Group: P 31
R_factor 0.211 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.489 61.489 267.865 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.4 Å
ligand ADP, ANP, MG enzyme
related structures by homologous chain: 1W5S
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceConformational changes induced by nucleotide binding in Cdc6/ORC from Aeropyrum pernix., Singleton MR, Morales R, Grainge I, Cook N, Isupov MN, Wigley DB, J Mol Biol. 2004 Oct 22;343(3):547-57. PMID:15465044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (1w5t.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (1w5t.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (1w5t.pdb3.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1W5T
  • CSU: Contacts of Structural Units for 1W5T
  • Likely Quarternary Molecular Structure file(s) for 1W5T
  • Structure Factors (327 Kb)
  • Retrieve 1W5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W5T from S2C, [Save to disk]
  • Re-refined 1w5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1W5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W5T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W5T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w5ta1, region A:300-409 [Jmol] [rasmolscript] [script source]
        - Domain d1w5ta2, region A:7-293 [Jmol] [rasmolscript] [script source]
        - Domain d1w5tb1, region B:300-409 [Jmol] [rasmolscript] [script source]
        - Domain d1w5tb2, region B:7-293 [Jmol] [rasmolscript] [script source]
        - Domain d1w5tc1, region C:300-409 [Jmol] [rasmolscript] [script source]
        - Domain d1w5tc2, region C:7-293 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w5t_A] [1w5t] [1w5t_B] [1w5t_C]
  • SWISS-PROT database: [Q9YFU8]
  • Domain organization of [Q9YFU8_AERPE] by SWISSPFAM
  • Domain found in 1W5T: [Cdc6_C ] by SMART
    • Other resources with information on 1W5T
  • Community annotation for 1W5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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