1W9B	Hydrolase	date	Oct 08, 2004
title	S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
authors	A.Bourderioux, M.Lefoix, D.Gueyrard, A.Tatibouet, S.Cottaz, S.Arz W.P.Burmeister, P.Rollin
compound		source
Molecule: Glycosidase Chain: M Synonym: Myrosinase Ec: 3.2.3.1		Organism_scientific: Sinapis Alba Organism_common: White Mustard Organism_taxid: 3728 Strain: Emergo Organ: Seed Tissue: Myrosin Grains
symmetry	Space Group: C 2 2 21	R_factor 0.175 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.300 137.200 80.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	BMA, CGT, FUC, GOL, MAN, NAG, SO4, XYP, ZN	enzyme	Hydrolase E.C.3.2.3.1 BRENDA
related structures	by homologous chain: 1DWA, 1E70
Gene Ontology	Chain Function Process Component M
Primary reference	The glucosinolate-myrosinase system. New insights into enzyme-substrate interactions by use of simplified inhibitors., Bourderioux A, Lefoix M, Gueyrard D, Tatibouet A, Cottaz S, Arzt S, Burmeister WP, Rollin P, Org Biomol Chem. 2005 May 21;3(10):1872-9. Epub 2005 Apr 14. PMID:15889170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (1w9b.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 1W9B CSU: Contacts of Structural Units for 1W9B Likely Quarternary Molecular Structure file(s) for 1W9B Structure Factors (624 Kb) Retrieve 1W9B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W9B from S2C, [Save to disk] Re-refined 1w9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W9B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W9B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W9B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w9b] [1w9b_M] SWISS-PROT database: [P29736] Domain organization of [MYRA_SINAL] by SWISSPFAM

Other resources with information on 1W9B

Community annotation for 1W9B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---