1WD5	Structural Genomics, Unknown Function	date	May 11, 2004
title	Crystal Structure Of Tt1426 From Thermus Thermophilus Hb8
authors	R.Shibata, M.Kukimoto-Niino, K.Murayama, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Hypothetical Protein Tt1426 Chain: A Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 41 21 2	R_factor 0.195 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.970 103.970 51.287 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MES, MSE	enzyme
related structures	by homologous chain: 2SQC
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution., Kukimoto-Niino M, Shibata R, Murayama K, Hamana H, Nishimoto M, Bessho Y, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S, Protein Sci 2005 Mar;14(3):823-7. Epub 2005 Feb 2. PMID:15689504

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1wd5.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 1WD5 CSU: Contacts of Structural Units for 1WD5 Likely Quarternary Molecular Structure file(s) for 1WD5 Retrieve 1WD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WD5 from S2C, [Save to disk]

View 1WD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WD5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WD5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1wd5a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wd5_A] [1wd5] SWISS-PROT database: [Q5SIB2] Domain organization of [Q5SIB2_THET8] by SWISSPFAM

Other resources with information on 1WD5

Community annotation for 1WD5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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