1WHE Glycoprotein date Jun 18, 1996
title Coagulation Factor, Nmr, 20 Structures
authors M.Sunnerhagen, G.A.Olah, J.Stenflo, S.Forsen, T.Drakenberg, J.Tre
compound source
Molecule: Coagulation Factor X
Chain: A
Ec: 3.4.21.6
Other_details: The Apo Form Of The Fragment Containing The Terminal Egf-Like Module
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
methodSolution NMR
ligand BHD, CGU enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe relative orientation of Gla and EGF domains in coagulation factor X is altered by Ca2+ binding to the first EGF domain. A combined NMR-small angle X-ray scattering study., Sunnerhagen M, Olah GA, Stenflo J, Forsen S, Drakenberg T, Trewhella J, Biochemistry 1996 Sep 10;35(36):11547-59. PMID:8794734
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (436 Kb) [Save to disk]
  • Biological Unit Coordinates (1whe.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1WHE
  • CSU: Contacts of Structural Units for 1WHE
  • Retrieve 1WHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WHE from S2C, [Save to disk]
    • View 1WHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WHE, from MSDmotif at EBI
  • Genome occurence of 1WHE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1whe_2, region 1-46 [Jmol] [rasmolscript] [script source]
        - Domain d1whe_1, region 47-86 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1whe_A] [1whe]
  • SWISS-PROT database: [P00743]
  • Domain organization of [FA10_BOVIN] by SWISSPFAM
  • Domains found in 1WHE: [EGF_CA] [GLA ] by SMART
    • Other resources with information on 1WHE
  • Community annotation for 1WHE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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