1WHX Rna Binding Protein date May 28, 2004
title Solution Structure Of The Second Rna Binding Domain From Hyp Protein Bab23448
authors T.Nagata, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoy Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Riken Cdna 1200009a02
Chain: A
Fragment: Rna Recognition Motif
Synonym: Hypothetical Protein Bab23448
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 1200009a02
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030811-91
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (564 Kb) [Save to disk]
  • Biological Unit Coordinates (1whx.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1WHX
  • Retrieve 1WHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WHX from S2C, [Save to disk]
    • View 1WHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WHX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WHX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1whxa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1whx] [1whx_A]
  • SWISS-PROT database: [Q8R3C6]
  • Domain organization of [RBM19_MOUSE] by SWISSPFAM
  • Domain found in 1WHX: [RRM ] by SMART
    • Other resources with information on 1WHX
  • Community annotation for 1WHX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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