1X0L Oxidoreductase date Mar 24, 2005
title Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase Extreme Thermophile, Thermus Thermophilus
authors J.Miyazaki, K.Asada, S.Fushinobu, T.Kuzuyama, M.Nishiyama
compound source
Molecule: Homoisocitrate Dehydrogenase
Chain: A, B
Ec: 1.1.1.87
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Hicdh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b(+)
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.963 143.243 177.846 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.87 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus: involvement of hydrophobic dimer-dimer interaction in extremely high thermotolerance., Miyazaki J, Asada K, Fushinobu S, Kuzuyama T, Nishiyama M, J Bacteriol 2005 Oct;187(19):6779-88. PMID:16166541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1x0l.pdb1.gz) 210 Kb
  • CSU: Contacts of Structural Units for 1X0L
  • Likely Quarternary Molecular Structure file(s) for 1X0L
  • Structure Factors (564 Kb)
  • Retrieve 1X0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X0L from S2C, [Save to disk]
  • Re-refined 1x0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1X0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X0L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X0L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x0l_B] [1x0l] [1x0l_A]
  • SWISS-PROT database: [Q8RQU4]
  • Domain organization of [Q8RQU4_THETH] by SWISSPFAM
  • Domain found in 1X0L: [Iso_dh ] by SMART
  • Other resources with information on 1X0L
  • Community annotation for 1X0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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