1X2Z Dna date Apr 26, 2005
title Nmr Solution Structures Of A Dna Dodecamer Containing A Tand Mismatches Using Noe And Residual Dipolar Couplings
authors F.Alvarez-Salgado, H.Desvaux, Y.Boulard
compound source
Molecule: 5'-D(Gpapcptpgptpgpcpapgptpc)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceNMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G-T mismatches., Alvarez-Salgado F, Desvaux H, Boulard Y, Magn Reson Chem. 2006 Dec;44(12):1081-9. PMID:16972306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1x2z.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1X2Z
  • Original NMR restraints for 1X2Z from PDB
  • Retrieve 1X2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X2Z from S2C, [Save to disk]
    • View 1X2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1X2Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X2Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x2z_A] [1x2z] [1x2z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1X2Z
  • Community annotation for 1X2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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