1XC0 Signaling Protein date Aug 31, 2004
title Twenty Lowest Energy Structures Of Pa4 By Solution Nmr
authors F.Porcelli, B.Buck, D.K.Lee, K.J.Hallock, A.Ramamoorthy, G.Vegli
compound source
Molecule: Pardaxin P-4
Chain: A
Synonym: Pa4
Engineered: Yes
 Synthetic: Yes
Other_details: Pardaxins Naturally Occur In Sole Fish Of Ge Pardachirus. Pa4 Was Synthesized Using Standard 9- Fluorenylmethoxycarbonyl-Based Solid-Pahse Methods With An Peptide Synthesizer. Crude Peptide Was Purified By Reversed Hplc
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceStructure and orientation of pardaxin determined by NMR experiments in model membranes., Porcelli F, Buck B, Lee DK, Hallock KJ, Ramamoorthy A, Veglia G, J Biol Chem 2004 Oct 29;279(44):45815-23. Epub 2004 Jul 29. PMID:15292173
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (1xc0.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1XC0
  • Original NMR restraints for 1XC0 from PDB
  • Retrieve 1XC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XC0 from S2C, [Save to disk]
    • View 1XC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XC0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XC0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xc0a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xc0] [1xc0_A]
  • SWISS-PROT database: [P81861]
  • Belongs to the pardaxin (pardaxin) family according to TCDB.
  • Domain organization of [PAP4_PARMA] by SWISSPFAM
    • Other resources with information on 1XC0
  • Community annotation for 1XC0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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