1XKY Lyase date Sep 30, 2004
title Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2 (Ba Bacillus Anthracis At 1.94a Resolution.
authors V.Levdikov, E.Blagova, M.J.Fogg, J.A.Brannigan, N.Milioti, A.J.Wi K.S.Wilson
compound source
Molecule: Dihydrodipicolinate Synthase
Chain: A, B, C, D
Ec: 4.2.1.52
Engineered: Yes
Organism_scientific: Bacillus Anthracis
Organism_taxid: 1392
Gene: Dapa-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Ysblic
symmetry Space Group: P 21 21 21
R_factor 0.153 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.203 126.882 173.319 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand K enzyme Lyase E.C.4.2.1.52 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of dihydrodipicolinate synthase (BA3935) from Bacillus anthracis at 1.94 A resolution., Blagova E, Levdikov V, Milioti N, Fogg MJ, Kalliomaa AK, Brannigan JA, Wilson KS, Wilkinson AJ, Proteins. 2006 Jan 1;62(1):297-301. PMID:16287120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (1xky.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 1XKY
  • CSU: Contacts of Structural Units for 1XKY
  • Likely Quarternary Molecular Structure file(s) for 1XKY
  • Structure Factors (803 Kb)
  • Retrieve 1XKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XKY from S2C, [Save to disk]
  • Re-refined 1xky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XKY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XKY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xky_B] [1xky_C] [1xky_D] [1xky] [1xky_A]
  • SWISS-PROT database: [Q81WN7]
  • Domain organization of [Q81WN7_BACAN] by SWISSPFAM
  • Domain found in 1XKY: [DHDPS ] by SMART
  • Other resources with information on 1XKY
  • Community annotation for 1XKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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