1XMT Structural Genomics, Unknown Function date Oct 04, 2004
title X-Ray Structure Of Gene Product From Arabidopsis Thaliana At
authors G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., E.Bitto, C.A.Bingman S.T.M.Allard, Center For Eukaryotic Structural Genomics (Ces
compound source
Molecule: Putative Acetyltransferase
Chain: A
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At1g77540
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl834(De3) Placi+Rare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp13-Gw
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.349 60.601 29.424 90.00 91.50 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand BR enzyme
note 1XMT is a representative structure
related structures by homologous chain: 1XO4
Primary referenceStructure of Arabidopsis thaliana At1g77540 Protein, a Minimal Acetyltransferase from the COG2388 Family(,)., Tyler RC, Bitto E, Berndsen CE, Bingman CA, Singh S, Lee MS, Wesenberg GE, Denu JM, Phillips GN Jr, Markley JL, Biochemistry. 2006 Dec 5;45(48):14325-14336. PMID:17128971
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1xmt.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1XMT
  • CSU: Contacts of Structural Units for 1XMT
  • Likely Quarternary Molecular Structure file(s) for 1XMT
  • Structure Factors (1557 Kb)
  • Retrieve 1XMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XMT from S2C, [Save to disk]
  • Re-refined 1xmt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XMT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1XMT from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XMT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xmta_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xmt_A] [1xmt]
  • SWISS-PROT database: [Q9CAQ2]
  • Domain organization of [Y1754_ARATH] by SWISSPFAM
  • Other resources with information on 1XMT
  • Community annotation for 1XMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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