1XOP Viral Protein date Oct 06, 2004
title Nmr Structure Of G1v Mutant Of Influenza Hemagglutinin Fusio In Dpc Micelles At Ph 5
authors Y.Li, X.Han, A.L.Lai, J.H.Bushweller, D.S.Cafiso, L.K.Tamm
compound source
Molecule: Hemagglutinin
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Derived From Influenza Hema Residues 1 To 20, Except That The First Residue G Was Repla V.
methodSolution NMR
Primary referenceMembrane structures of the hemifusion-inducing fusion peptide mutant G1S and the fusion-blocking mutant G1V of influenza virus hemagglutinin suggest a mechanism for pore opening in membrane fusion., Li Y, Han X, Lai AL, Bushweller JH, Cafiso DS, Tamm LK, J Virol 2005 Sep;79(18):12065-76. PMID:16140782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1xop.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1XOP
  • Original NMR restraints for 1XOP from PDB
  • Retrieve 1XOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XOP from S2C, [Save to disk]
    • View 1XOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XOP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XOP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xop] [1xop_A]
  • SWISS-PROT database: [Q6VMJ8]
  • Domain organization of [Q6VMJ8_9INFA] by SWISSPFAM
    • Other resources with information on 1XOP
  • Community annotation for 1XOP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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