1XTP Structural Genomics, Transferase date Oct 22, 2004
title Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam Methyltransferase Of The Duf858pfam05891 Family
authors M.A.Robien, W.G.J.Hol, Structural Genomics Of Pathogenic Proto Consortium (Sgpp)
compound source
Molecule: Lmaj004091aaa
Chain: A
Engineered: Yes
 Organism_scientific: Leishmania Major
Organism_taxid: 347515
Strain: Friedlin
Gene: Lmjf30.0810
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21star(De3)
Expression_system_vector_type: T7 System
Expression_system_plasmid: Pet14b
symmetry Space Group: P 1 21 1
R_factor 0.153 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.208 42.560 69.853 90.00 98.27 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand MSE, SAI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1xtp.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1XTP
  • CSU: Contacts of Structural Units for 1XTP
  • Likely Quarternary Molecular Structure file(s) for 1XTP
  • Structure Factors (241 Kb)
  • Retrieve 1XTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XTP from S2C, [Save to disk]
  • Re-refined 1xtp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XTP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XTP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xtpa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xtp] [1xtp_A]
  • SWISS-PROT database: [Q4Q7M2]
  • Domain organization of [Q4Q7M2_LEIMA] by SWISSPFAM
    • Other resources with information on 1XTP
  • Community annotation for 1XTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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