1XVM	Hydrolase	date	Oct 28, 2004
title	Trypsin From Fusarium Oxysporum- Room Temperature To Atomic
authors	A.Schmidt, V.S.Lamzin
compound		source
Molecule: Trypsin Chain: A Ec: 3.4.21.4		Organism_scientific: Fusarium Oxysporum Organism_taxid: 5507
Molecule: Substrate Tripeptide Gly-Ala-Arg Chain: B Engineered: Yes		Synthetic: Yes Other_details: The Peptide Is Chemically Synthesized.
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.277 37.037 40.100 102.22 103.93 102.59
method	X-Ray Diffraction	resolution	1.10 Å
ligand		enzyme	Hydrolase E.C.3.4.21.4 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Extraction of functional motion in trypsin crystal structures., Schmidt A, Lamzin VS, Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1132-9. Epub 2005, Jul 20. PMID:16041079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1xvm.pdb1.gz) 95 Kb CSU: Contacts of Structural Units for 1XVM Likely Quarternary Molecular Structure file(s) for 1XVM Structure Factors (604 Kb) Retrieve 1XVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XVM from S2C, [Save to disk] Re-refined 1xvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XVM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XVM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XVM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xvm] [1xvm_B] [1xvm_A] SWISS-PROT database: [P35049] Domain organization of [TRYP_FUSOX] by SWISSPFAM Domain found in 1XVM: [Tryp_SPc ] by SMART

Other resources with information on 1XVM

Community annotation for 1XVM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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