1XWP Rna date Nov 02, 2004
title Solution Structure Of Aucgca Loop
authors T.Sakamoto, A.Oguro, G.Kawai, T.Ohtsu, Y.Nakamura
compound source
Molecule: 5'-R(Gpgpapgpapupcpgpcpapcpupcpcpa
Chain: A
Synonym: Aucgca Hexa-Nucleotide Loop
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceNMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A., Sakamoto T, Oguro A, Kawai G, Ohtsu T, Nakamura Y, Nucleic Acids Res 2005 Feb 01;33(2):745-54. Print 2005. PMID:15687383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (1xwp.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1XWP
  • Original NMR restraints for 1XWP from PDB
  • Retrieve 1XWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XWP from S2C, [Save to disk]
    • View 1XWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XWP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XWP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xwp] [1xwp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1XWP
  • Community annotation for 1XWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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