1XXV	Hydrolase	date	Nov 08, 2004
title	Yersinia Yoph (Residues 163-468) Binds Phosphonodifluorometh Containing Hexapeptide At Two Sites
authors	M.I.Ivanov, J.A.Stuckey, H.L.Schubert, M.A.Saper, J.B.Bliska
compound		source
Molecule: Protein-Tyrosine Phosphatase Yoph Chain: A, B Fragment: Catalytic Domain, Residues 163-468 Synonym: Virulence Protein Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Yersinia Enterocolitica Organism_taxid: 630 Gene: Yoph, Yop51 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7-7
Molecule: Epidermal Growth Factor Receptor Derived Peptide Chain: C, D, E, F Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized By Robert Zamboni And Gresser, Merck Frosst, Montreal
symmetry	Space Group: P 1	R_factor 0.178 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.130 47.170 71.820 104.45 115.05 89.97
method	X-Ray Diffraction	resolution	2.50 Å
ligand	FTY, NH2	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
related structures	by homologous chain: 1XXP, 1YTS
Gene Ontology	Chain Function Process Component A, B
Primary reference	Two substrate-targeting sites in the Yersinia protein tyrosine phosphatase co-operate to promote bacterial virulence., Ivanov MI, Stuckey JA, Schubert HL, Saper MA, Bliska JB, Mol Microbiol 2005 Mar;55(5):1346-56. PMID:15720545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (1xxv.pdb1.gz) 49 Kb Biological Unit Coordinates (1xxv.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 1XXV CSU: Contacts of Structural Units for 1XXV Likely Quarternary Molecular Structure file(s) for 1XXV Retrieve 1XXV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XXV from S2C, [Save to disk]

View 1XXV in 3D

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Visual 3D analysis of 1XXV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XXV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xxv_D] [1xxv_A] [1xxv_B] [1xxv] [1xxv_C] [1xxv_F] [1xxv_E] SWISS-PROT database: [P15273] Domain organization of [YOPH_YEREN] by SWISSPFAM Domain found in 1XXV: [PTPc ] by SMART

Other resources with information on 1XXV

Community annotation for 1XXV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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