1Y1B Hydrolase Inhibitor date Nov 18, 2004
title Solution Structure Of Anemonia Elastase Inhibitor
authors H.Hemmi, T.Kumazaki, K.Yoshizawa-Kumagaye, Y.Nishiuchi, T.Yoshid T.Ohkubo, Y.Kobayashi
compound source
Molecule: Elastase Inhibitor
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Modified From The Sequence Naturally In Sea Anemone Anemonia Sulcata ((Snake-Locks Sea Anemone).
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • serine-type endopeptidase in...


    • Primary referenceStructural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata., Hemmi H, Kumazaki T, Yoshizawa-Kumagaye K, Nishiuchi Y, Yoshida T, Ohkubo T, Kobayashi Y, Biochemistry 2005 Jul 19;44(28):9626-9636. PMID:16008348
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (1y1b.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1Y1B
  • Original NMR restraints for 1Y1B from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Y1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y1B from S2C, [Save to disk]
    • View 1Y1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y1B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y1B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y1b_A] [1y1b]
  • SWISS-PROT database: [P16895]
  • Domain organization of [IELA_ANESU] by SWISSPFAM
  • Domain found in 1Y1B: [KAZAL ] by SMART
    • Other resources with information on 1Y1B
  • Community annotation for 1Y1B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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