1Y39	Structural Protein Rna	date	Nov 24, 2004
title	Co-Evolution Of Protein And Rna Structures Within A Highly C Ribosomal Domain
authors	M.S.Dunstan, D.Guhathakurta, D.E.Draper, G.L.Conn
compound		source
Molecule: 58 Nucleotide Ribosomal 23s Rna Domain Chain: C, D Engineered: Yes Mutation: Yes		Synthetic: Yes Other_details: Nts 1051-1108 From E. Coli 23s Rrna
Molecule: 50s Ribosomal Protein L11 Chain: A, B Fragment: C-Terminal Domain Of Ribosomal Protein L11 Synonym: Ribosomal Protein L11 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Puc18 Expression_system_plasmid: L11-C76(S69n)
symmetry	Space Group: P 43 21 2	R_factor 0.220 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.240 150.240 62.984 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	3CO, GOL, GTP, K, MG	enzyme
related structures	by homologous chain: 1HC8, 1QA6
Gene Ontology	Chain Function Process Component A, B
Primary reference	Coevolution of protein and RNA structures within a highly conserved ribosomal domain., Dunstan MS, Guhathakurta D, Draper DE, Conn GL, Chem Biol 2005 Feb;12(2):201-6. PMID:15734647

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (1y39.pdb1.gz) 37 Kb Biological Unit Coordinates (1y39.pdb2.gz) 37 Kb LPC: Ligand-Protein Contacts for 1Y39 CSU: Contacts of Structural Units for 1Y39 Likely Quarternary Molecular Structure file(s) for 1Y39 Retrieve 1Y39 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y39 from S2C, [Save to disk]

View 1Y39 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y39

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y39, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y39_D] [1y39_A] [1y39_C] [1y39] [1y39_B] SWISS-PROT database: [P56210] Domain organization of [RL11_BACST] by SWISSPFAM Domain found in 1Y39: [RL11 ] by SMART

Other resources with information on 1Y39

Community annotation for 1Y39 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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