1Y7N Protein Transport date Dec 09, 2004
title Solution Structure Of The Second Pdz Domain Of The Human Neu Adaptor X11alpha
authors A.E.Duquesne, M.De Ruijter, J.Brouwer, J.W.Drijfhout, S.B.Nabuur C.A.E.M.Spronk, G.W.Vuister, M.Ubbink, G.W.Canters
compound source
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family 1;
Chain: A
Fragment: Second Pdz Domain
Synonym: Neuron-Specific X11 Protein, Neuronal Munc18-1-Int Protein 1, Mint-1, Adapter Protein X11alpha;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain
Gene: Apba1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3h
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase., Duquesne AE, Ruijter M, Brouwer J, Drijfhout JW, Nabuurs SB, Spronk CA, Vuister GW, Ubbink M, Canters GW, J Biomol NMR 2005 Jul;32(3):209-18. PMID:16132821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (1y7n.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1Y7N
  • Original NMR restraints for 1Y7N from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Y7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y7N from S2C, [Save to disk]
    • View 1Y7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y7N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y7N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y7n] [1y7n_A]
  • SWISS-PROT database: [Q02410]
  • Domain organization of [APBA1_HUMAN] by SWISSPFAM
  • Domain found in 1Y7N: [PDZ ] by SMART
    • Other resources with information on 1Y7N
  • Community annotation for 1Y7N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science