1Y7T	Oxidoreductase	date	Dec 10, 2004
title	Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase Co With Nadph
authors	T.Tomita, S.Fushinobu, T.Kuzuyama, M.Nishiyama
compound		source
Molecule: Malate Dehydrogenase Chain: A, B Ec: 1.1.1.37 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Strain: At-62 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm105 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc19
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.120 85.170 117.930 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	NDP, TRS	enzyme	Oxidoreductase E.C.1.1.1.37 BRENDA
note	1Y7T is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)., Tomita T, Fushinobu S, Kuzuyama T, Nishiyama M, Biochem Biophys Res Commun 2005 Aug 26;334(2):613-8. PMID:16009341

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (1y7t.pdb1.gz) 110 Kb LPC: Ligand-Protein Contacts for 1Y7T CSU: Contacts of Structural Units for 1Y7T Likely Quarternary Molecular Structure file(s) for 1Y7T Structure Factors (626 Kb) Retrieve 1Y7T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y7T from S2C, [Save to disk] Re-refined 1y7t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y7T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y7T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y7T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y7t_B] [1y7t] [1y7t_A] SWISS-PROT database: [P10584] Domain organization of [MDH_THETH] by SWISSPFAM

Other resources with information on 1Y7T

Community annotation for 1Y7T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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