1Y90 Rna date Dec 14, 2004
title Hiv-1 Dis(Mal) Duplex Mn-Soaked
authors E.Ennifar, P.Walter, P.Dumas
compound source
Molecule: 5'-R(Cp(5bu) Pupgpcpupgpapgpgpupgpcpapcpapcpapgpcpap
Chain: A, B
Engineered: Yes
Other_details: Hiv-1 Dis Rna
 Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.194 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.080 59.080 63.659 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.08 Å
ligand 5BU, MN enzyme
Primary referenceA crystallographic study of the binding of 13 metal ions to two related RNA duplexes., Ennifar E, Walter P, Dumas P, Nucleic Acids Res 2003 May 15;31(10):2671-82. PMID:12736317
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1y90.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1Y90
  • CSU: Contacts of Structural Units for 1Y90
  • Likely Quarternary Molecular Structure file(s) for 1Y90
  • Structure Factors (38 Kb)
  • Retrieve 1Y90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y90 from S2C, [Save to disk]
  • Re-refined 1y90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y90
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y90, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y90_B] [1y90_A] [1y90]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1Y90
  • Community annotation for 1Y90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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