1Y9M	Hydrolase	date	Dec 16, 2004
title	Crystal Structure Of Exo-Inulinase From Aspergillus Awamori Spacegroup P212121
authors	R.A.P.Nagem, A.L.Rojas, A.M.Golubev, O.S.Korneeva, E.V.Eneyskaya A.A.Kulminskaya, K.N.Neustroev, I.Polikarpov
compound		source
Molecule: Exo-Inulinase Chain: A Fragment: Sequence Database Residues 20-537 Ec: 3.2.1.80		Organism_scientific: Aspergillus Awamori Organism_taxid: 105351 Strain: 2250
symmetry	Space Group: P 21 21 21	R_factor 0.165 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.816 82.131 136.219 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	GOL, MAN, NAG	enzyme	Hydrolase E.C.3.2.1.80 BRENDA
related structures	by homologous chain: 1Y9G
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of exo-inulinase from Aspergillus awamori: the enzyme fold and structural determinants of substrate recognition., Nagem RA, Rojas AL, Golubev AM, Korneeva OS, Eneyskaya EV, Kulminskaya AA, Neustroev KN, Polikarpov I, J Mol Biol 2004 Nov 19;344(2):471-80. PMID:15522299

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (1y9m.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 1Y9M CSU: Contacts of Structural Units for 1Y9M Likely Quarternary Molecular Structure file(s) for 1Y9M Structure Factors (408 Kb) Retrieve 1Y9M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y9M from S2C, [Save to disk] Re-refined 1y9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y9M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y9M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y9M, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1y9ma2, region A:20-372 [Jmol] [rasmolscript] [script source]     - Domain d1y9ma1, region A:373-536 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y9m] [1y9m_A] SWISS-PROT database: [Q96TU3] Domain organization of [Q96TU3_ASPAW] by SWISSPFAM Domain found in 1Y9M: [Glyco_32 ] by SMART

Other resources with information on 1Y9M

Community annotation for 1Y9M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---