1YEW	Oxidoreductase, Membrane Protein	date	Dec 28, 2004
title	Crystal Structure Of Particulate Methane Monooxygenase
authors	R.L.Lieberman, A.C.Rosenzweig
compound		source
Molecule: Particulate Methane Monooxygenase, B Subunit Chain: A, E, I		Organism_scientific: Methylococcus Capsulatus Organism_taxid: 243233 Strain: Bath
Molecule: Particulate Methane Monooxygenase, A Subunit Chain: B, F, J Engineered: Yes		Organism_scientific: Methylococcus Capsulatus Organism_taxid: 243233 Strain: Str. Bath Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Particulate Methane Monooxygenase Subunit C2 Chain: C, G, K Engineered: Yes		Organism_scientific: Methylococcus Capsulatus Organism_taxid: 414 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 42 21 2	R_factor 0.272 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 264.140 264.140 150.005 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	CU, CUA, ZN	enzyme
Gene Ontology	Chain Function Process Component A, E, I F, J, B K, C, G monooxygenase activity
Primary reference	Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane., Lieberman RL, Rosenzweig AC, Nature 2005 Jan 26;. PMID:15674245

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk] Biological Unit Coordinates (1yew.pdb1.gz) 130 Kb Biological Unit Coordinates (1yew.pdb2.gz) 130 Kb Biological Unit Coordinates (1yew.pdb3.gz) 131 Kb Biological Unit Coordinates (1yew.pdb4.gz) 753 Kb Biological Unit Coordinates (1yew.pdb5.gz) 754 Kb Biological Unit Coordinates (1yew.pdb6.gz) 380 Kb LPC: Ligand-Protein Contacts for 1YEW CSU: Contacts of Structural Units for 1YEW Likely Quarternary Molecular Structure file(s) for 1YEW Structure Factors (1047 Kb) Retrieve 1YEW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YEW from S2C, [Save to disk] Re-refined 1yew structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YEW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YEW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YEW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yew_C] [1yew_I] [1yew_G] [1yew_J] [1yew_A] [1yew] [1yew_E] [1yew_K] [1yew_B] [1yew_F] SWISS-PROT database: [O05111] [Q49104] [Q607G3] Domain organization of [O05111_METCA] [Q49104_METCA] [Q607G3_METCA] by SWISSPFAM

Other resources with information on 1YEW

Community annotation for 1YEW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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