1YIM Hormone Growth Factor Receptor date Jan 12, 2005
title Human Estrogen Receptor Alpha Ligand-Binding Domain In Compl Compound 4
authors P.M.Fitzgerald, N.Sharma
compound source
Molecule: Estrogen Receptor
Chain: A
Fragment: Ligand Binding Domain, Residues 307-554
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 65 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.550 58.550 276.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CM4 BindingDB enzyme
Primary referenceEstrogen receptor ligands. Part 10: Chromanes: old scaffolds for new SERAMs., Tan Q, Blizzard TA, Morgan JD 2nd, Birzin ET, Chan W, Yang YT, Pai LY, Hayes EC, DaSilva CA, Warrier S, Yudkovitz J, Wilkinson HA, Sharma N, Fitzgerald PM, Li S, Colwell L, Fisher JE, Adamski S, Reszka AA, Kimmel D, DiNinno F, Rohrer SP, Freedman LP, Schaeffer JM, Hammond ML, Bioorg Med Chem Lett 2005 Mar 15;15(6):1675-81. PMID:15745820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1yim.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1YIM
  • CSU: Contacts of Structural Units for 1YIM
  • Likely Quarternary Molecular Structure file(s) for 1YIM
  • Structure Factors (251 Kb)
  • Retrieve 1YIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIM from S2C, [Save to disk]
  • Re-refined 1yim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YIM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yim] [1yim_A]
  • SWISS-PROT database: [P03372]
  • Domain organization of [ESR1_HUMAN] by SWISSPFAM
  • Domain found in 1YIM: [HOLI ] by SMART
    • Other resources with information on 1YIM
  • Community annotation for 1YIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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