1YJH Oxygen Storage Transport date Jan 14, 2005
title Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
authors A.Weichsel, H.Badgandi, W.R.Montfort
compound source
Molecule: Salivary Nitrophorin
Chain: A
Engineered: Yes
 Organism_scientific: Cimex Lectularius
Organism_common: Bed Bug
Organism_taxid: 79782
Organ: Salivary Glands
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.000 41.560 65.370 90.00 95.29 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand HEM, NO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nitric oxide transport

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1yjh.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1YJH
  • CSU: Contacts of Structural Units for 1YJH
  • Likely Quarternary Molecular Structure file(s) for 1YJH
  • Structure Factors (250 Kb)
  • Retrieve 1YJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YJH from S2C, [Save to disk]
  • Re-refined 1yjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YJH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yjh_A] [1yjh]
  • SWISS-PROT database: [O76745]
  • Domain organization of [O76745_CIMLE] by SWISSPFAM
  • Domain found in 1YJH: [IPPc ] by SMART
    • Other resources with information on 1YJH
  • Community annotation for 1YJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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