1YKJ	Oxidoreductase	date	Jan 18, 2005
title	A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate Bo
authors	L.J.Cole, D.L.Gatti, B.Entsch, D.P.Ballou
compound		source
Molecule: P-Hydroxybenzoate Hydroxylase Chain: A, B Synonym: 4-Hydroxybenzoate 3-Monooxygenase, Phbh Ec: 1.14.13.2 Engineered: Yes Mutation: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Poba Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm105 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pie130 (A Derivative Of Puc18)
symmetry	Space Group: P 21 21 2	R_factor 0.201 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.860 85.897 146.074 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FAD, PHB, PSL, SO4	enzyme	Oxidoreductase E.C.1.14.13.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Removal of a methyl group causes global changes in p-hydroxybenzoate hydroxylase., Cole LJ, Gatti DL, Entsch B, Ballou DP, Biochemistry 2005 Jun 7;44(22):8047-58. PMID:15924424

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (1ykj.pdb1.gz) 140 Kb Biological Unit Coordinates (1ykj.pdb2.gz) 277 Kb LPC: Ligand-Protein Contacts for 1YKJ CSU: Contacts of Structural Units for 1YKJ Likely Quarternary Molecular Structure file(s) for 1YKJ Structure Factors (608 Kb) Retrieve 1YKJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YKJ from S2C, [Save to disk] Re-refined 1ykj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YKJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YKJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YKJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ykj_A] [1ykj] [1ykj_B] SWISS-PROT database: [P20586] Domain organization of [PHHY_PSEAE] by SWISSPFAM

Other resources with information on 1YKJ

Community annotation for 1YKJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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