1YNG Rna date Jan 24, 2005
title Nmr Structure Of The Apob Mrna Stem-Loop And Its Interaction C To U Editing Apobec1 Complementary Factor
authors C.Maris, J.Masse, F.H.Allain, A.Chester, N.Navaratnam
compound source
Molecule: Apolipoprotein B Mrna
Chain: A
Fragment: Editing Site Of Apobec-1 Enzyme
Synonym: Apob Mrna
Engineered: Yes
 Synthetic: Yes
Other_details: In Vitro T7 Polymerase Transcription. The Se This Rna Naturally Exists In Homo Sapiens (Human).
methodSolution NMR
Primary referenceNMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor., Maris C, Masse J, Chester A, Navaratnam N, Allain FH, RNA 2005 Feb;11(2):173-86. PMID:15659357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1yng.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1YNG
  • Original NMR restraints for 1YNG from PDB
  • Retrieve 1YNG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YNG from S2C, [Save to disk]
    • View 1YNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YNG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YNG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yng_A] [1yng]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1YNG
  • Community annotation for 1YNG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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