1YNZ Protein Binding date Jan 26, 2005
title Sh3 Domain Of Yeast Pin3
authors P.Kursula, I.Kursula, P.Zou, F.Lehmann, Y.H.Song, M.Wilmanns
compound source
Molecule: Pin3p
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ril
symmetry Space Group: C 1 2 1
R_factor 0.211 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.550 26.940 23.770 90.00 102.76 90.00
method X-Ray Diffractionresolution 2.20 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1ynz.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1YNZ
  • Likely Quarternary Molecular Structure file(s) for 1YNZ
  • Structure Factors (22 Kb)
  • Retrieve 1YNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YNZ from S2C, [Save to disk]
  • Re-refined 1ynz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YNZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YNZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ynz] [1ynz_A]
  • SWISS-PROT database: [Q06449]
  • Domain organization of [PIN3_YEAST] by SWISSPFAM
  • Domain found in 1YNZ: [SH3 ] by SMART
    • Other resources with information on 1YNZ
  • Community annotation for 1YNZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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