1YQY Structure of B. Anthrax Lethal factor in complex with a hydroxamate inhibitor date
authors Shoop, W.L., Xiong, Y., Wiltsie, J., Woods, A., Guo, J., Pivnichny, J.V., Felcetto, T., Michael, B.F., Bansal, A.
compound source
symmetry
R_factor
R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 915, ZN BindingDB enzyme
related structures by homologous chain: 1J7N
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnthrax lethal factor inhibition., Shoop WL, Xiong Y, Wiltsie J, Woods A, Guo J, Pivnichny JV, Felcetto T, Michael BF, Bansal A, Cummings RT, Cunningham BR, Friedlander AM, Douglas CM, Patel SB, Wisniewski D, Scapin G, Salowe SP, Zaller DM, Chapman KT, Scolnick EM, Schmatz DM, Bartizal K, MacCoss M, Hermes JD, Proc Natl Acad Sci U S A. 2005 May 31;102(22):7958-63. Epub 2005 May 23. PMID:15911756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1yqy.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1YQY
  • CSU: Contacts of Structural Units for 1YQY
  • Likely Quarternary Molecular Structure file(s) for 1YQY
  • Structure Factors (197 Kb)
  • Retrieve 1YQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YQY from S2C, [Save to disk]
  • Re-refined 1yqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yqy] [1yqy_A]
  • SWISS-PROT database: [P15917]
  • Domain organization of [LEF_BACAN] by SWISSPFAM
    • Other resources with information on 1YQY
  • Community annotation for 1YQY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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