1YS5 Signaling Protein date Feb 07, 2005
title Solution Structure Of The Antigenic Domain Of Gna1870 Of Nei Meningitidis
authors F.Cantini, S.Savino, V.Masignani, M.Pizza, M.Scarselli, E.Swennen G.Romagnoli, D.Veggi, L.Banci, R.Rappuoli
compound source
Molecule: Lipoprotein
Chain: A
Fragment: Immunodominant C-Terminal Bc Domain
Engineered: Yes
 Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
Gene: Gna1870
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet20b+
methodSolution NMR
Primary referenceSolution structure of the immunodominant domain of protective antigen GNA1870 of Neisseria meningitidis., Cantini F, Savino S, Scarselli M, Masignani V, Pizza M, Romagnoli G, Swennen E, Veggi D, Banci L, Rappuoli R, J Biol Chem. 2005 Dec 31;. PMID:16407174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1327 Kb) [Save to disk]
  • Biological Unit Coordinates (1ys5.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1YS5
  • Original NMR restraints for 1YS5 from PDB
  • Retrieve 1YS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YS5 from S2C, [Save to disk]
    • View 1YS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YS5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YS5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ys5] [1ys5_A]
  • SWISS-PROT database: [Q6VRZ6]
  • Domain organization of [Q6VRZ6_NEIME] by SWISSPFAM
    • Other resources with information on 1YS5
  • Community annotation for 1YS5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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