1YTR Antibiotic date Feb 11, 2005
title Nmr Structure Of Plantaricin A In Dpc Micelles, 20 Structure
authors P.E.Kristiansen, G.Fimland, D.Mantzilas, J.Nissen-Meyer
compound source
Molecule: Bacteriocin Plantaricin A
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Lactobacillus Plantaru
methodSolution NMR
note 1YTR is a representative structure
Primary referenceStructure and mode of action of the membrane-permeabilizing antimicrobial peptide pheromone plantaricin A., Kristiansen PE, Fimland G, Mantzilas D, Nissen-Meyer J, J Biol Chem 2005 Jun 17;280(24):22945-50. Epub 2005 Apr 1. PMID:15805109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1ytr.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1YTR
  • Original NMR restraints for 1YTR from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YTR from S2C, [Save to disk]
    • View 1YTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YTR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YTR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ytr] [1ytr_A]
  • SWISS-PROT database: [P80214]
  • Belongs to the lactococcin a (lactococcin a) family according to TCDB.
  • Domain organization of [PLNA_LACPL] by SWISSPFAM
    • Other resources with information on 1YTR
  • Community annotation for 1YTR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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