1YWR	Transferase	date	Feb 18, 2005
title	Crystal Structure Analysis Of Inactive P38 Kinase Domain In With A Monocyclic Pyrazolone Inhibitor
authors	A.Golebiowski, J.A.Townes, M.J.Laufersweiler, T.A.Brugel, M.P.Cl C.M.Clark, J.F.Djung, S.K.Laughlin, M.P.Sabat, R.G.Bookland, J.C B.De, L.C.Hsieh, M.J.Janusz, R.L.Walter, M.E.Webster, M.J.Mekel
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38alpha, Map Kin P38alpha, Crk1; Ec: 2.7.1.37 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Mapk14, Crk1, Csbp1, Csbp2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.736 74.575 77.377 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	LI9	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1R3C
Gene Ontology	Chain Function Process Component A
Primary reference	The development of monocyclic pyrazolone based cytokine synthesis inhibitors., Golebiowski A, Townes JA, Laufersweiler MJ, Brugel TA, Clark MP, Clark CM, Djung JF, Laughlin SK, Sabat MP, Bookland RG, Vanrens JC, De B, Hsieh LC, Janusz MJ, Walter RL, Webster ME, Mekel MJ, Bioorg Med Chem Lett 2005 May 2;15(9):2285-9. PMID:15837310

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (1ywr.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 1YWR CSU: Contacts of Structural Units for 1YWR Likely Quarternary Molecular Structure file(s) for 1YWR Structure Factors (280 Kb) Retrieve 1YWR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YWR from S2C, [Save to disk] Re-refined 1ywr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YWR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YWR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YWR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ywr] [1ywr_A] SWISS-PROT database: [P47811] Domain organization of [MK14_MOUSE] by SWISSPFAM Domain found in 1YWR: [S_TKc ] by SMART

Other resources with information on 1YWR

Community annotation for 1YWR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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