1Z3Z	Lyase	date	Mar 14, 2005
title	The Crystal Structure Of A Dgd Mutant: Q52a
authors	E.J.Fogle, W.Liu, M.D.Toney
compound		source
Molecule: Dialkylglycine Decarboxylase Chain: A Ec: 4.1.1.64 Engineered: Yes Mutation: Yes		Organism_scientific: Burkholderia Cepacia Organism_taxid: 292 Gene: Dgda Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbtac
symmetry	Space Group: P 64 2 2	R_factor 0.209 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.040 150.040 84.420 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	K, MES, NA, PLP	enzyme	Lyase E.C.4.1.1.64 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Role of q52 in catalysis of decarboxylation and transamination in dialkylglycine decarboxylase., Fogle EJ, Liu W, Woon ST, Keller JW, Toney MD, Biochemistry. 2005 Dec 20;44(50):16392-404. PMID:16342932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (1z3z.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 1Z3Z CSU: Contacts of Structural Units for 1Z3Z Likely Quarternary Molecular Structure file(s) for 1Z3Z Structure Factors (100 Kb) Retrieve 1Z3Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z3Z from S2C, [Save to disk] Re-refined 1z3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z3Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Z3Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z3Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z3z_A] [1z3z] SWISS-PROT database: [P16932] Domain organization of [DGDA_BURCE] by SWISSPFAM

Other resources with information on 1Z3Z

Community annotation for 1Z3Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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