1Z8O Oxidoreductase date Mar 31, 2005
title Ferrous Dioxygen Complex Of The Wild-Type Cytochrome P450ery
authors S.Nagano, J.R.Cupp-Vickery, T.L.Poulos
compound source
Molecule: 6-Deoxyerythronolide B Hydroxylase
Chain: A
Synonym: 6-Deb Hydroxylase, Erythomycin A Biosynthesis Hydr Cytochrome P450 107a1, Cypcviia1, P450eryf;
Ec: 1.-.-.-
Engineered: Yes
 Organism_scientific: Saccharopolyspora Erythraea
Organism_taxid: 1836
Gene: Eryf, Cyp107a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.900 78.640 97.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DEB, HEM, OXY enzyme Oxidoreductase E.C.1 BRENDA
related structures by homologous chain: 1Z8P
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of the Ferrous Dioxygen Complex of Wild-type Cytochrome P450eryF and Its Mutants, A245S and A245T: INVESTIGATION OF THE PROTON TRANSFER SYSTEM IN P450eryF., Nagano S, Cupp-Vickery JR, Poulos TL, J Biol Chem 2005 Jun 10;280(23):22102-7. Epub 2005 Apr 11. PMID:15824115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1z8o.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1Z8O
  • CSU: Contacts of Structural Units for 1Z8O
  • Likely Quarternary Molecular Structure file(s) for 1Z8O
  • Structure Factors (567 Kb)
  • Retrieve 1Z8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z8O from S2C, [Save to disk]
  • Re-refined 1z8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Z8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Z8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z8O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z8o] [1z8o_A]
  • SWISS-PROT database: [Q00441]
  • Domain organization of [CPXJ_SACEN] by SWISSPFAM
    • Other resources with information on 1Z8O
  • Community annotation for 1Z8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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