1Z9H Isomerase date Apr 02, 2005
title Microsomal Prostaglandin E Synthase Type-2
authors T.Yamada, J.Komoto, K.Watanabe, Y.Ohmiya, F.Takusagawa
compound source
Molecule: Membrane-Associated Prostaglandin E Synthase-2
Chain: A, B, C, D
Ec: 5.3.99.3
Engineered: Yes
Organism_scientific: Macaca Fascicularis
Organism_common: Crab-Eating Macaque
Organism_taxid: 9541
Tissue: Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.240 122.830 111.530 90.00 110.60 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ACT, CL, IMN enzyme Isomerase E.C.5.3.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal Structure and Possible Catalytic Mechanism of Microsomal Prostaglandin E Synthase Type 2 (mPGES-2)., Yamada T, Komoto J, Watanabe K, Ohmiya Y, Takusagawa F, J Mol Biol 2005 May 20;348(5):1163-76. Epub 2005 Apr 2. PMID:15854652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (1z9h.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (1z9h.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (1z9h.pdb3.gz) 354 Kb
  • LPC: Ligand-Protein Contacts for 1Z9H
  • CSU: Contacts of Structural Units for 1Z9H
  • Likely Quarternary Molecular Structure file(s) for 1Z9H
  • Structure Factors (465 Kb)
  • Retrieve 1Z9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z9H from S2C, [Save to disk]
  • Re-refined 1z9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z9H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z9h_A] [1z9h_C] [1z9h] [1z9h_D] [1z9h_B]
  • SWISS-PROT database: [Q9N0A4]
  • Domain organization of [PGES2_MACFA] by SWISSPFAM
  • Other resources with information on 1Z9H
  • Community annotation for 1Z9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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