1ZEO	Transcription	date	Apr 19, 2005
title	Crystal Structure Of Human Ppar-Gamma Ligand Binding Domain With An Alpha-Aryloxyphenylacetic Acid Agonist
authors	G.Q.Shi, J.F.Dropinski, B.M.Mckeever, A.D.Adams, K.L.Macnaul, A.E J.P.Berger, G.Zhou, T.W.Doebber
compound		source
Molecule: Peroxisome Proliferator Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain (Lbd), Residues 203-477 Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t2
symmetry	Space Group: C 1 2 1	R_factor 0.219 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.573 61.442 118.051 90.00 101.72 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	C01 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Design and synthesis of alpha-aryloxyphenylacetic acid derivatives: a novel class of PPARalpha/gamma dual agonists with potent antihyperglycemic and lipid modulating activity., Shi GQ, Dropinski JF, McKeever BM, Xu S, Becker JW, Berger JP, MacNaul KL, Elbrecht A, Zhou G, Doebber TW, Wang P, Chao YS, Forrest M, Heck JV, Moller DE, Jones AB, J Med Chem. 2005 Jun 30;48(13):4457-68. PMID:15974597

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (1zeo.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 1ZEO CSU: Contacts of Structural Units for 1ZEO Likely Quarternary Molecular Structure file(s) for 1ZEO Structure Factors (139 Kb) Retrieve 1ZEO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZEO from S2C, [Save to disk] Re-refined 1zeo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZEO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZEO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZEO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zeo_B] [1zeo] [1zeo_A] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 1ZEO: [HOLI ] by SMART

Other resources with information on 1ZEO

Community annotation for 1ZEO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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