1ZG3 Plant Protein, Transferase date Apr 20, 2005
title Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase With Sah And 2,7,4'-Trihydroxyisoflavanone
authors C.J.Liu, B.E.Deavours, S.Richard, J.L.Ferrer, R.A.Dixon, J.P.No
compound source
Molecule: Isoflavanone 4'-O-Methyltransferase
Chain: A
Engineered: Yes
Organism_scientific: Medicago Truncatula
Organism_common: Barrel Medic
Organism_taxid: 3880
Gene: Omt
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a+
symmetry Space Group: P 43 2 2
R_factor 0.218 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.106 72.106 188.398 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 2HI, SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses., Liu CJ, Deavours BE, Richard SB, Ferrer JL, Blount JW, Huhman D, Dixon RA, Noel JP, Plant Cell. 2006 Dec;18(12):3656-69. Epub 2006 Dec 15. PMID:17172354
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1zg3.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 1ZG3
  • CSU: Contacts of Structural Units for 1ZG3
  • Likely Quarternary Molecular Structure file(s) for 1ZG3
  • Structure Factors (154 Kb)
  • Retrieve 1ZG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZG3 from S2C, [Save to disk]
  • Re-refined 1zg3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZG3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZG3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zg3] [1zg3_A]
  • SWISS-PROT database: [Q29U70]
  • Domain organization of [Q29U70_MEDTR] by SWISSPFAM
  • Other resources with information on 1ZG3
  • Community annotation for 1ZG3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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