1ZGY Transcription date Apr 22, 2005
title Structural And Biochemical Basis For Selective Repression Of Orphan Nuclear Receptor Lrh-1 By Shp
authors Y.Li, M.Choi, K.Suino, A.Kovach, J.Daugherty, S.A.Kliewer, H.E.Xu
compound source
Molecule: Peroxisome Proliferator Activated Receptor Gamma
Chain: A
Fragment: Ppargamma Ligand Binding Domain
Synonym: Ppar-Gamma
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nuclear Receptor Subfamily 0, Group B, Member 2
Chain: B
Fragment: Shp 2nd Lxxll Motif
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
symmetry Space Group: C 1 2 1
R_factor 0.231 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.602 54.493 66.497 90.00 97.50 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BRL BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and biochemical basis for selective repression of the orphan nuclear receptor liver receptor homolog 1 by small heterodimer partner., Li Y, Choi M, Suino K, Kovach A, Daugherty J, Kliewer SA, Xu HE, Proc Natl Acad Sci U S A 2005 Jul 5;102(27):9505-10. Epub 2005 Jun 23. PMID:15976031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1zgy.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1ZGY
  • CSU: Contacts of Structural Units for 1ZGY
  • Likely Quarternary Molecular Structure file(s) for 1ZGY
  • Structure Factors (257 Kb)
  • Retrieve 1ZGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZGY from S2C, [Save to disk]
  • Re-refined 1zgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZGY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zgy_B] [1zgy] [1zgy_A]
  • SWISS-PROT database: [P97947] [P37231]
  • Domain organization of [NR0B2_RAT] [PPARG_HUMAN] by SWISSPFAM
  • Domain found in 1ZGY: [HOLI ] by SMART
    • Other resources with information on 1ZGY
  • Community annotation for 1ZGY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science