1ZHB	Immune System	date	Apr 25, 2005
title	Crystal Structure Of The Murine Class I Major Histocompatibi Complex Of H-2db, B2-Microglobulin, And A 9-Residue Peptide From Rat Dopamine Beta-Monooxigenase
authors	T.Sandalova, J.Michaelsson, R.A.Harris, J.Odeberg, G.Schneider, K A.Achour
compound		source
Molecule: H-2 Class I Histocompatibility Antigen, D-B Alpha Chain: A, D, G, J Fragment: Extracellular Part Synonym: H- 2db Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: H2-D Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B, E, H, K Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: B2m Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 9-Mer Peptide From Dopamine Beta-Monooxygenase Chain: C, F, I, L Synonym: Dopamine Beta- Hydroxylase, Dbh Ec: 1.14.17.1 Engineered: Yes		Synthetic: Yes Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116
symmetry	Space Group: P 1 21 1	R_factor 0.225 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.063 122.715 99.403 90.00 103.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand		enzyme	Oxidoreductase E.C.1.14.17.1 BRENDA
related structures	by homologous chain: 1NAM, 1QQD
Gene Ontology	Chain Function Process Component H, K, E, B
Primary reference	A structural basis for CD8+ T cell-dependent recognition of non-homologous peptide ligands: Implications for molecular mimicry in autoreactivity., Sandalova T, Michaelsson J, Harris RA, Odeberg J, Schneider G, Karre K, Achour A, J Biol Chem 2005 Apr 21;. PMID:15845547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk] Biological Unit Coordinates (1zhb.pdb1.gz) 66 Kb Biological Unit Coordinates (1zhb.pdb2.gz) 66 Kb Biological Unit Coordinates (1zhb.pdb3.gz) 66 Kb Biological Unit Coordinates (1zhb.pdb4.gz) 66 Kb CSU: Contacts of Structural Units for 1ZHB Likely Quarternary Molecular Structure file(s) for 1ZHB Structure Factors (480 Kb) Retrieve 1ZHB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZHB from S2C, [Save to disk] Re-refined 1zhb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZHB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZHB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZHB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zhb_A] [1zhb_J] [1zhb_I] [1zhb_D] [1zhb_F] [1zhb_B] [1zhb_G] [1zhb_L] [1zhb_K] [1zhb_E] [1zhb_C] [1zhb] [1zhb_H] SWISS-PROT database: [P01887] [Q05754] [P01899] Domain organization of [B2MG_MOUSE] [DOPO_RAT] [HA11_MOUSE] by SWISSPFAM Domain found in 1ZHB: [IGc1 ] by SMART

Other resources with information on 1ZHB

Community annotation for 1ZHB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---