1ZNF Zinc Finger Dna Binding Domain date Sep 25, 1989
title Three-Dimensional Solution Structure Of A Single Zinc Finger Binding Domain
authors M.S.Lee, G.P.Gippert, K.V.Soman, D.A.Case, P.E.Wright
compound source
Molecule: 31st Zinc Finger From Xfin
Chain: A
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
methodSolution NMR
ligand ACE, NH2, ZN enzyme
note 1ZNF (Molecule of the Month:pdb87)is a representative structure
Primary referenceThree-dimensional solution structure of a single zinc finger DNA-binding domain., Lee MS, Gippert GP, Soman KV, Case DA, Wright PE, Science 1989 Aug 11;245(4918):635-7. PMID:2503871
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (1znf.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1ZNF
  • CSU: Contacts of Structural Units for 1ZNF
  • Retrieve 1ZNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZNF from S2C, [Save to disk]
    • View 1ZNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZNF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZNF, from MSDmotif at EBI
  • Genome occurence of 1ZNF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1znf__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1znf_A] [1znf]
  • SWISS-PROT database: [P08045]
  • Domain organization of [XFIN_XENLA] by SWISSPFAM
  • Domain found in 1ZNF: [ZnF_C2H2 ] by SMART
    • Other resources with information on 1ZNF
  • Community annotation for 1ZNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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