3KZO Transferase date Dec 08, 2009
title Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase C With Carbamyl Phosphate And N-Acetyl-L-Norvaline
authors D.Shi, X.Yu, N.M.Allewell, M.Tuchman
compound source
Molecule: N-Acetylornithine Carbamoyltransferase
Chain: A
Synonym: Aotcase
Ec: 2.1.3.9
Engineered: Yes
Organism_scientific: Xanthomonas Campestris Pv. Campestris
Organism_taxid: 190485
Strain: Atcc 33913
Gene: Argf, Argf', Xcc2249
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: I 21 3
R_factor 0.203 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.953 129.953 129.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand AN0, CP, GOL, KCX, SO4 enzyme Transferase E.C.2.1.3.9 BRENDA
note 3KZO supersedes 1ZQ8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis., Shi D, Yu X, Roth L, Morizono H, Tuchman M, Allewell NM, Proteins. 2006 Aug 1;64(2):532-42. PMID:16741992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3kzo.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 3KZO
  • CSU: Contacts of Structural Units for 3KZO
  • Structure Factors (247 Kb)
  • Retrieve 3KZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KZO from S2C, [Save to disk]
  • Re-refined 3kzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KZO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KZO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kzo_A] [3kzo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KZO
  • Community annotation for 3KZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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