1ZV5	Hydrolase Immune System	date	Jun 01, 2005
title	Crystal Structure Of The Variable Domain Of The Camelid Heav Antibody D2-L29 In Complex With Hen Egg White Lysozyme
authors	E.De Genst, K.Silence, K.Decanniere, K.Conrath, R.Loris, J.Kinne, S.Muyldermans, L.Wyns
compound		source
Molecule: Lysozyme C Chain: L Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
Molecule: Immunoglobulin Heavy Chain Antibody Variable Doma Chain: A Fragment: Vhh D2-L29 Engineered: Yes		Organism_scientific: Camelus Dromedarius Organism_common: Arabian Camel Organism_taxid: 9838 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Wk6su- Expression_system_vector_type: Plasmid Expression_system_plasmid: Phen06
symmetry	Space Group: P 43 21 2	R_factor 0.217 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.073 114.073 35.673 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	PO4	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component L
Primary reference	Molecular basis for the preferential cleft recognition by dromedary heavy-chain antibodies., De Genst E, Silence K, Decanniere K, Conrath K, Loris R, Kinne J, Muyldermans S, Wyns L, Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4586-91. Epub 2006 Mar 13. PMID:16537393

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (1zv5.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 1ZV5 CSU: Contacts of Structural Units for 1ZV5 Likely Quarternary Molecular Structure file(s) for 1ZV5 Structure Factors (132 Kb) Retrieve 1ZV5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZV5 from S2C, [Save to disk] Re-refined 1zv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZV5 in 3D

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Visual 3D analysis of 1ZV5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZV5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zv5_A] [1zv5_L] [1zv5] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domains found in 1ZV5: [IGv] [LYZ1 ] by SMART

Other resources with information on 1ZV5

Community annotation for 1ZV5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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