1ZX4 Cell Cycle date Jun 06, 2005
title Structure Of Parb Bound To Dna
authors M.A.Schumacher, B.E.Funnell
compound source
Molecule: Pars-Small Dna Centromere Site
Chain: T
Engineered: Yes
Other_details: W-Strand
Synthetic: Yes

Molecule: Pars-Small Dna Centromere Site
Chain: S
Engineered: Yes
Other_details: C-Strand

Synthetic: Yes

Molecule: Plasmid Partition Par B Protein
Chain: A, B
Fragment: P1 Parb
Synonym: P1 Parb; Parb
Engineered: Yes
Mutation: Yes

Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
Gene: Parb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 62 2 2
R_factor 0.248 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.600 154.600 132.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.98 Å
ligand CIT, MSE enzyme
Primary referenceStructures of ParB bound to DNA reveal mechanism of partition complex formation., Schumacher MA, Funnell BE, Nature. 2005 Nov 24;438(7067):516-9. PMID:16306995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1zx4.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1ZX4
  • CSU: Contacts of Structural Units for 1ZX4
  • Likely Quarternary Molecular Structure file(s) for 1ZX4
  • Structure Factors (200 Kb)
  • Retrieve 1ZX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZX4 from S2C, [Save to disk]
  • Re-refined 1zx4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZX4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zx4_A] [1zx4_T] [1zx4_B] [1zx4_S] [1zx4]
  • SWISS-PROT database: [Q38420]
  • Domain organization of [Q38420_BPP1] by SWISSPFAM
  • Other resources with information on 1ZX4
  • Community annotation for 1ZX4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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