1ZXK	Cell Adhesion	date	Jun 08, 2005
title	Crystal Structure Of Cadherin8 Ec1 Domain
authors	S.D.Patel, C.Ciatto, C.P.Chen, F.Bahna, N.Arkus, I.Schieren, M.Raj T.M.Jessell, B.Honig, S.R.Price, L.Shapiro
compound		source
Molecule: Cadherin-8 Chain: A, B Fragment: Ec1 Domain Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Cdh8 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psmt3
symmetry	Space Group: P 1 2 1	R_factor 0.252 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.196 39.934 66.439 90.00 110.68 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Type II cadherin ectodomain structures: implications for classical cadherin specificity., Patel SD, Ciatto C, Chen CP, Bahna F, Rajebhosale M, Arkus N, Schieren I, Jessell TM, Honig B, Price SR, Shapiro L, Cell. 2006 Mar 24;124(6):1255-68. PMID:16564015

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (1zxk.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 1ZXK Likely Quarternary Molecular Structure file(s) for 1ZXK Structure Factors (202 Kb) Retrieve 1ZXK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZXK from S2C, [Save to disk] Re-refined 1zxk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZXK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZXK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZXK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zxk] [1zxk_B] [1zxk_A] SWISS-PROT database: [P97291] Domain organization of [CADH8_MOUSE] by SWISSPFAM Domain found in 1ZXK: [CA ] by SMART

Other resources with information on 1ZXK

Community annotation for 1ZXK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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