1ZXZ	Hydrolase	date	Jun 09, 2005
title	X-Ray Structure Of Peptide Deformylase From Arabidopsis Thal (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant
authors	S.Fieulaine, C.Juillan-Binard, A.Serero, F.Dardel, C.Giglione, T. J.L.Ferrer
compound		source
Molecule: Peptide Deformylase, Mitochondrial Chain: A, B Fragment: Mature Protein Synonym: Pdf; Polypeptide Deformylase Ec: 3.5.1.88 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Pdf1a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe30 Derivative
symmetry	Space Group: P 21 21 21	R_factor 0.236 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.200 73.800 109.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ZN	enzyme	Hydrolase E.C.3.5.1.88 BRENDA
Primary reference	The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms., Fieulaine S, Juillan-Binard C, Serero A, Dardel F, Giglione C, Meinnel T, Ferrer JL, J Biol Chem. 2005 Dec 23;280(51):42315-24. Epub 2005 Sep 28. PMID:16192279

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1zxz.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 1ZXZ CSU: Contacts of Structural Units for 1ZXZ Likely Quarternary Molecular Structure file(s) for 1ZXZ Structure Factors (91 Kb) Retrieve 1ZXZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZXZ from S2C, [Save to disk] Re-refined 1zxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZXZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZXZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZXZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zxz_A] [1zxz] [1zxz_B] SWISS-PROT database: [Q9FV53] Domain organization of [DEF1A_ARATH] by SWISSPFAM

Other resources with information on 1ZXZ

Community annotation for 1ZXZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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